Trucs & Astuces

 


 

Share

Easy ponctual share (October 2019)

Omero.iviewer

How to play with the image visualization (1/4) - Basic options (March 2020)
How to play with the image visualization (2/4) - Group option (April 2020)
How to play with the image visualization (3/4) - Settings tab (May 2020)
How to play with the image visualization (4/4) - ROI tab (June 2020)
 

Omero.figure

Add images on a figure (November 2019)
How to highlight a zoomed region (December 2019)
One way (1/2) to highlight multi-zoomed regions in one image (January 2020)
One way (2/2) to highlight multi-zoomed regions in one image (February 2020)
 

Input

Optimize the TIFF import & display of large images by an IMS conversion (July/August 2020)
 

Output

How to make a movie - Omero.insight (September 2020)
How to locally download images (1/3) - Omero.web (October 2020)
How to locally download images (2/3) - Omero.insight (November 2020)
How to locally download images (3/3) - Script on Omero.web (December 2020)
 

Analyse

Fiji Omero plugin (1/3) - Installation (January 2021)
Fiji Omero plugin (2/3) - Basic options (February 2021)
Fiji Omero plugin (3/3) - Batch your image analysis (March 2021) 
 

Omero.parade

Populate Metadata script - How to link measurements to images - Part I = Format the .csv file (January 2023)
Populate Metadata script - How to link measurements to images - Part II = use the script (March 2023)
How to make the most of your global image measurements - Omero.parade - Part I = Filter image display using measurements (September 2023)
How to make the most of your global image measurements - Omero.parade - Part II = Filter measurments using the heatmap (October 2023)
How to make the most of your global measurements - Omero.parade - Part III = Plot layout (November 2023)

Metadata

Enrich your image information with the voxel size (April 2021)
Enrich your image information (Tag edition - 1/3) Omero.web - Manually (June 2021)
Enrich your image information (Tag edition - 2/3) Omero.insight - Manually (July 2021)
Enrich your image information (Tag edition - 3/3) Omero.web - Auto Tag (September 2021)
Enrich your image information - Add Key Values manually (October 2021)
Enrich your image information - Semi guided importation of Key Values (1/3) - Omero.mde activation (November 2021)
Enrich your image information - Semi guided importation of Key Values (2/3) - How to use omero.mde (January 2022)
 






 


FAQ

1) My images are not correctly displayed on Omero : there is a clock symbol, how can I manage for that?

When the TIFF images are bigger than 3192x3912 pixels they are converted into a pyramidal format to ease their display in Omero. This conversion is sometimes very slow. One way to proceed is to previously convert the images into a pyramidal format. It can be done very easily by drag and drop into  Imaris File Converter (go to the bottom of the page to get the PC or Mac version) to get pyramidal .ims files
From : https://docs.openmicroscopy.org/bio-formats/6.3.1/developers/wsi.html

2) How can I install Omero Insight on my old PC 32 bits ?

The solution: https://forum.image.sc/t/omero-insight-on-32-bit-windows/27799
is to download the Linux version: https://github.com/ome/omero-insight/releases/download/v5.5.1/OMERO.insight-5.5.1.zip
Unzip and make a shortcut to the .bat file: OMERO.insight-5.5.1\bin\omero-insight.bat